The joint workshop entitled "IFReC / IPR Joint Seminar Multilevel Systems Biology: Genomes, Structures, and Networks" was held on November 16-17 by IFReC & Institute for protein Research (IPR). Front-line systems biology researchers from around the world presented their recent research progress. Also, there were active question-and-answer sessions following the lectures.

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IFReC / IPR Joint Seminar Multilevel Systems Biology: Genomes, Structures, and Networks

Date / Time:	Wednesday, November 16, 2011 9:50am - 7:00pm Thursday, November 17, 2011 10:00am - 5:50pm
Venue:	Taniguchi Memorial Hall, Integrated Life Science building, Suita Campus, Osaka Univ.
Pre-registration :	NOT required
Fee:	Free
Contact:	WPI Immunology Frontier Research Center Osaka University　 Laboratory of Systems Immunology / Daron M. Standley 3-1 Yamada-oka, Suita City, Osaka 565-0871, Japan Tel: +81-6-6879-4264 (from overseas) 06-6879-4264 (in Japan) E-mail: Institute for Protein Research, Osaka University Laboratory of Protein Informatics / Haruki Nakamura 3-2 Yamada-oka, Suita City, Osaka 565-0871, Japan Tel: +81-6-6879-4311 (from overseas) 06-6879-4311 (in Japan) E-mail:

| Wednesday, Nov. 16, 2011 | Thursday, Nov. 17, 2011

Wednesday, Nov. 16, 2011
Date	Time	Speakers	Title
Nov. 16	9:50am-10:00am	Shizuo Akira Director / IFReC Toshiharu Hase Director / IPR	Opening Remarks
	Systems biology IA
	10:00am- 10:40am	Andreas Raue Univ. of Freiburg, Germany	Analyzing optimal treatment strategies for chemotherapy with the help of identifiable and predictive dynamical models
	10:40am- 11:20am	Jesse Cotari Cornell Univ., USA	Dissecting cross-antagonism in cytokine sensitivity using single-cell phosphoprofiling and computational modeling
	11:20am- 12:00pm	Aarash Bordbar Univ. Calf. San Diego, USA	Systems analysis elucidates role of metabolism in macrophage activation
	12:20pm- 1:30pm	Lunch
	Systems Biology IB
	1:30pm- 2:10pm	Luca Mariani IFOM-IEO Campus, Italy	A system biology approach to the regulation of IL-4 transcription during Th2-lymphocytes differentiation
	2:10pm- 2:50pm	Daniel Zak Seattle Biomedical Research Institute, USA	Systems analysis of innate immunity and vaccination
	2:50pm- 3:30pm	Melissa Fullwood A*STAR-Duke-NUS Partnership and the Genome Institute of Singapore, Singapore	3-dimensional insights into our genomes
	3:30pm-3:50pm	Coffee Break
	Protein Informatics
	3:50pm- 4:30pm	Ken Nishikawa Osaka Univ., Japan	Genome-wide computational analysis of intrinsically disordered proteins
	4:30pm- 5:10pm	Akira R. Kinjo Osaka Univ., Japan	Composite structural motifs of interaction interfaces for delineating biological functions of proteins
	5:10pm- 5:50pm	Koichi Takahashi RIKEN, Japan	Simulating biochemical reaction networks at the molecular resolution
	6:00pm-	Gathering

| Wednesday, Nov. 16, 2011 | Thursday, Nov. 17, 2011

Thursday, Nov. 17, 2011
Date	Time	Speakers	Title
Nov. 17	Systems Biology IIA
	10:00am- 10:40am	Shinya Kuroda Univ. of Tokyo, Japan	Information coding of ERK signalling networks
	10:40am- 11:20am	Chikara Furusawa Osaka Univ., Japan	A Dynamic Model of cell differentiation: toward understanding of stem cellsystems
	11:20am- 12:00pm	Mariko Okada RIKEN, Japan	Identifying logics of signal-transcription network for cellular differentiation
	12:20pm- 1:30pm	Lunch
	Genomics
	1:30pm- 2:10pm	Tim Hubbard Wellcome Trust Sanger Inst., UK	From genome annotation to genomic medicine
	2:10pm- 2:50pm	Martin Frith AIST, Japan	Reliable large-scale sequence comparison
	2:50pm- 3:30pm	Akio Kanai Keio Univ., Japan	Systematic analysis of non-coding RNAs and their regulatory proteins
	3:30pm- 3:50pm	Coffee Break
	Transcription
	3:50pm- 4:30pm	Luca Giorgetti Inst. Curie, CNRS, France	Non-cooperative interactions between NF-kB and clustered DNA binding sites promote graded responses to external stimuli
	4:30pm- 5:10pm	Yutaka Suzuki Univ. of Tokyo, Japan	Transcriptome Analysis of Human Genes using Next Generation Sequence
	5:10pm- 5:50pm	Mark Maienschein-Cline Univ. Chicago, USA	Discovering Transcription Factor Regulatory Targets Using Gene Expression and Binding Data